JADWAL KULIAH BIOINFORMATIKA SEMESTER GENAP JURUSAN BIOLOGI FMIPA UNIVERSITAS BRAWIJAYA

By Prof. Fatchiyah, Ph.D.

Feb

20

Hari                 : Rabu

Pukul               : 09.20 – 11.05 WIB

Tempat            : MC3.1

 

NO.

TANGGAL

TOPIK

DOSEN

1.

 18-2-2015 Pendahuluan

F

2.

 25-2-2015 Dasar-dasar browsing and Searching GeneBank: Nucleotide Database F

3.

 4-3-2015 Nucleotide sequence analysis F

4.

 11-3-2015 dbSNP sequence Variation (Kuis) F

5.

 18-3-2015 Student Presentation: Nucleotide database to genome mapping and analysis (SCL) F

6.

 25-3-2015 Polymorfisme and variation genome

F

7.

 1-4-2015 Comparative genome, Taxonomy and evolution (Kuis)

F

8.

 8-4-2015 Student Presentation: Polymorphisme to taxonomy mapping (SCL)

F

9.

 15-4-2015

UJIAN TENGAH SEMESTER

F

 

10.

 29-4-2015 Dasar-dasar browsing and Searching GeneBank: protein and PDB Database

W

11.

 6-5-2015 Protein sequence analysis

W

12.

 13-5-2015 3D protein analysis (kuis)

W

13.

 20-5-2015 Protein folding

W

14.

 27-5-2015 Protein network pathway (TT)

W

15.

 3-6-2015 Student Presentation: 3D protein to protein folding & network pathway (SCL)

W
UJIAN AKHIR SEMESTER

W

Keterangan: F : Prof. Fatchiyah, M.Kes., Ph.D.  W         : Widodo, S.Si., M.Si., Ph.D.Med.Sc.

 

SCL:  berupa mini projek.

 

ASSESMENT

Nilai Kuliah  (NK):

  • Ujian Tengah Semester          : 35%
  • Ujian akhir                               : 35%
  • Kuis                                         :10%
  • Diskusi/keaktifan di kelas       :10%
  • Tugas                                      : 10%

 

Nilai Praktikum (NP):

  • Placements test                      : 20 %
  • Laporan                                   : 40 %
  • Ujian Akhir Praktikum             : 40 %

 

Nilai Akhir  (NA) :   (2 NK + 1 NP)/3

Skor Nilai Akhir (Nilai Huruf = NH):

≥80            : A

76-<80       : B+

70- <76      : B

60- <70      : C+

56- <60      : C

50- <56      : D+

46- <50      : D

>46            : E

 

Daftar Pustaka:

  1. Fatchiyah. 2015. Prinsip Dasar Bioinformatika. UB Press. Malang
  2. Marketa Zvelebil and Jeremy O. Baum, 2008, Understanding bioinformatic, Garland Science, Taylor and Francis group publisher
  3. Jean-Michel Claverie, Ph. D., Cedric Notredame, Ph.D. 2006, Bioinformatics For Dummies, 2nd Edition, For Dummies Publisher
  4. Cynthia Gibas and Per Jambeck, 2001, Developing Bioinformatics Computer Skills, O’Reilly Media publisher.
  5. Huaiyu Mi and Paul Thomas. Methods in Molecular Biology, 2009, Volume 563, Part 2, 123-140
  1. GeneBank: NCBI GeneBank: www.ncbi.nlm.nih.gov/,
  2. DDBJ: http://www.ddbj.nig.ac.jp/
  3. Embl: http://www.ebi.ac.uk/
  4. Protein analysis: http://www.expasy.ch/sprot/sprot-top.html
  5. protein characterization http://www.mips.biochem.mpg.de dan http://www.protomap.cs.huji.ac.il
  6. Database alligment sequence: Hovergen http://pbil.univ-lyon1.fr/databases/hovergen.html (vertebrate alignments)
  7. Pfam http://www.sanger.ac.uk/Software/Pfam/ (protein domain alignments and profile HMMs)
  8. BLOCKS http://blocks.fhcrc.org/

14. Ribosomal Database Project http://rdp.cme.msu.edu/html/ alignments and trees derived from rRNA sequences