Lecture teknik analisis sidik jari molekuler

No	Tanggal	Topik	Dosen	Ket
1	09-9-15	Pendahuluan, konsep dasar dan prespektif biologi molekuler	F	Ceramah, Diskusi, Laptop, LCD
2	16-9-15	Struktur Molekuler dari gen dan Kromosom Replikasi DNA	F	Presentasi, Diskusi Laptop. LCD, Video
3	23-9-15	Proses Transkripsi Gen pada sintesis protein	F	Presentasi, Diskusi Laptop. LCD, Video
4	30-9-15	Proses Translasi Gen pada sintesis protein	F	Presentasi, Diskusi Laptop. LCD, Video
5	7-10-15	Mekanisme regulasi secara umum level seluler & molekuler	ELA	Ceramah, Diskusi, Laptop, LCD,
6	14-10-15	Mekanisme regulasi gen prokariota	ELA	Presentasi, Diskusi Laptop. LCD, Video, Kuis
7	21-10-15	Mekanisme regulasi gen eukariota, Tanaman	ELA	Presentasi, Diskusi Laptop. LCD, Video
8	28-10-15	UTS
	04-11-15
9	11-11-15	Mekanisme regulasi gen eukariota: Human and animal	ELA	Presentasi, Diskusi Laptop. LCD, Video, Kuis
10	18-11-15	Struktur dasar Protein: determinasi & klasifikasi	SW	Ceramah, Diskusi, Laptop, LCD
11	25-11-15	Protein modification	SW	Ceramah, Diskusi, Laptop, LCD, Kuis
12	02-12-15	Functional Protein	SW	Presentasi, Diskusi Laptop. LCD, Video
13	09-12-15	Interaksi antara DNA-Protein & Protein-Protein	SW	Presentasi, Diskusi Laptop. LCD, Video, Kuis
14	16-12-15	Proteomics, Metabolomics, and Systems Biology	WDD	Ceramah, Diskusi, Laptop, LCD, Kuis
15	23-12-15	Gene Regulation in Development and Evolution	SBS	Ceramah, Diskusi, Laptop, LCD, Kuis
16		UAS

Keterangan:

Dosen Utama: F (Fatchiyah, Ph.D); ELA (Dr.Ir. Estri Laras A., MSc.St), SW (Dr. Sri Widyarti, MS)

Dosen tamu: WDD (Widodo, PhD.) and SBS (Prof. Sutiman B. Sumitro, SU, D.Sc.).

Jadual Kuliah Biologi Molekuler (MAB 4162: 2sks)

JB-UB, Semester Ganjil 2015-2016

Kelas: B

Hari: Rabu 9:20-11:00 Ruang: MP 2.4

No	Tanggal	Topik	Dosen	Ket
1	090-9-15	Pendahuluan, konsep dasar dan prespektif biologi molekuler	F	Ceramah, Diskusi, Laptop, LCD
2	16-9-15	Struktur Molekuler dari gen dan Kromosom Replikasi DNA	F	Presentasi, Makalah, Diskusi Laptop. LCD, Video
3	23-9-15	Proses Transkripsi Gen pada sintesis protein	F	Presentasi, Makalah, Diskusi Laptop. LCD, Video
4	30-9-15	Proses Translasi Gen pada sintesis protein	F	Presentasi, Makalah, Diskusi Laptop. LCD, Video
5	7-10-15	Mekanisme regulasi secara umum level seluler & molekuler	ELA	Ceramah, Diskusi, Laptop, LCD,
6	14-10-15	Mekanisme regulasi gen prokariota	ELA	Presentasi, Diskusi Laptop. LCD, Video, Kuis
7	21-10-15	Mekanisme regulasi gen eukariota, Tanaman	ELA	Presentasi, Diskusi Laptop. LCD, Video
8	28-10-15	UTS
	04-11-15
9	11-11-15	Mekanisme regulasi gen eukariota: Human and animal	ELA	Presentasi, Diskusi Laptop. LCD, Video, Kuis
10	18-11-15	Struktur dasar Protein: determinasi & klasifikasi	SW	Ceramah, Diskusi, Laptop, LCD
11	25-11-15	Protein modification	SW	Ceramah, Diskusi, Laptop, LCD, Kuis
12	02-12-15	Functional Protein	SW	Presentasi, Makalah,Diskusi Laptop. LCD, Video
13	09-12-15	Interaksi antara DNA-Protein & Protein-Protein	SW	Presentasi, Makalah, Diskusi Laptop. LCD, Video, Kuis
14	16-12-15	Proteomics, Metabolomics, and Systems Biology	WDD	Ceramah, Diskusi, Laptop, LCD, Kuis
15	23-12-15	Gene Regulation in Development and Evolution	SBS	Ceramah, Diskusi, Laptop, LCD, Kuis
16		UAS

Keterangan:

Dosen Utama: F (Fatchiyah, Ph.D); ELA (Dr.Ir. Estri Laras A., MSc.St), SW (Dr. Sri Widyarti, MS)

Dosen tamu: WDD (Widodo, PhD.) and SBS (Prof. Sutiman B. Sumitro, SU, D.Sc.).

Malang,

Koordinator

Prof. Fatchiyah, Ph.D

assigment 1 of human genetics lecture

By Prof. Fatchiyah, Ph.D.

Sep

Home works of Human Genetics Lecture: Pedigree Analysis

The answers of home work send to email: molbiol.bio.ub@gmail.com

Before September 17, 2015

HOME WORKS Pedegree analysis (pre exam 1)

Materi Workshop Pengelolaan Laboratorium oleh RG Smonagenes UB

By Prof. Fatchiyah, Ph.D.

Sep

Workshop Pengelolaan Laboratorium diselenggarakan oleh RG Smonagenes UB dalam rangka PHK C

workshop ini diberikan ke peserta non PLP di UB, dan PLP di PTN dan PTS serta SMU se Kodya Malang,

Di ruang pertemuan MIPA center, Universitas Brawijaya, Malang. Durasi workshop selama 40 jam kerja, dimulai hari Senin 7 September 2015.

pemateri : Prof Fatchiyah, Dr.Ir. Gatot Ciptadi, Dr. Arie Srihardyastutie, M.Biomed., Instruktur: Dr.dr. Nurdiana, M.Kes., Dr. Titin Andri Wihastuti, Luluk, Setyowati, Rista NR, Faraline, dan Antonius Christianto.

materi pemateri 1:

1. Peran PLP dalam Manajemen Laboratorium Pendidikan (Fatchiyah)

2. Seluk beluk Pranata Laboratorium Pendidikan Perguruan Tinggi

RPS MK Sidik Jari Molekuler

By Prof. Fatchiyah, Ph.D.

Sep

Matriks Rencana Pembelajaran Semester Mata Kuliah Sidik Jari Molekuler.

Minggu ke	Kemampuan Akhir yang Diharapkan (CLO)	Bahan kajian	Pokok Bahasan (topics)	Sub Pokok Bahasan (subtopics)	Bentuk Pembelajaran (Learning methods)	Indikator/Kriteria Penilaian (Value Criteria)	Bobot Nilai (%)	Fasilitas Pembelajaran (learning Facility)
1	Menjelaskan Dasar-dasar sidik jari DNA dan DNA typing dalam forensik	Dasar-dasar sidik jari DNA dan DNA typing dalam forensik	Overview Dasar-dasar sidik jari DNA dan DNA typing dalam forensik	DNA Fingerprinting & DNA typing on Forensic Biology	Lecture and discussion	Kebenaran dan ketepatan analisis	6	Laptop, LCD, module
2	Melakukan pengambilan sampel, purifikasi, penyimpanan	Pengambilan sampel, purifikasi, penyimpanan	Sample tracking	Sample collection, extraction, purification & storage	Presentation, Lecture and discussion	Kebenaran dan ketepatan analisis	6	Laptop, LCD, module, paper exam
3	Menetapkan metode isolasi dan analysis sampel molecular dan sekuensing	Molecular sample preparation	isolasi dan analysis sampel molecular dan sekuensing	DNA isolation, PCR, DDGE and Sequencing	Presentation, Lecture and discussion	Kebenaran dan ketepatan analisis	10	Laptop, LCD, module, paper exam
4	Memahami perbedaan genome dan mitokodria typing	Genetic basis of DNA typing	Basic Analysis of DNA typing	Genomic or mitokondria DN A	Presentation, Mini Project Lecture and discussion	Kebenaran dan ketepatan analisis	6	Laptop, LCD, module, paper exam
5	Membedakan Fingerprinting DNA & Forensic DNA system	Comparation of Fingerprinting DNA & Forensic DNA system	Fingerprinting DNA & Forensic DNA system	CODIS, Y-chromosome, SNP, STR, SSP, HLA typing	Presentation, Mini Project Lecture and discussion	Kebenaran dan ketepatan analisis	6	Laptop, LCD, module, paper exam
6	Menganlisis data molekuler secara in silico	Analisis data molekuler secara in silico	Bioinformatic Analysis	DNA Seq analysis, alignment, phylogenetic tree	Presentation, mini project, Lecture and discussion	Kebenaran dan ketepatan analisis	10	Laptop, LCD, module, paper exam
7	Menjelasakan Dasar teori DNA Barcoding	Dasar teori DNA Barcoding	DNA Barcoding analysis	What is DNA Barcoding? Biomarker for DNA animal barcode	Presentation, Lecture and discussion	Kebenaran dan ketepatan analisis	6	Laptop, LCD, module, paper exam
8			Middle test
9	Membandingkan analisis DNA Barcoding pada biodiversitas dan kekerabatan hewan	Analisis DNA Barcoding pada biodiversitas dan kekerabatan hewan	DNA Barcoding analysis on animal molecular biodiversity and taxonomy	Barcode of Life Data Systems (BOLD) database GeneBank Database for DNA & Protein	Presentation, Mini Project Lecture and discussion	Kebenaran dan ketepatan analisis	16	Laptop, LCD, module, paper exam
10	Membandingkan dasar analisis kekerabatan spesies	Dasar-dasar analisis kekerabatan spesies	Molecular data Interpretation	UPGM, statistics analysis, Clad	Presentation, Lecture and discussion	Kebenaran dan ketepatan analisis	6	Laptop, LCD, module, paper exam
11	Membandingkan analisis DNA Barcoding pada biodiversitas dan kekerabatan pada mikrobia	Analisis DNA Barcoding pada biodiversitas dan kekerabatan pada mikrobia	Biomarker for microbe DNA Barcoding analysis	16SRNA, SNP, SST	Presentation, Mini Project Lecture and discussion	Kebenaran dan ketepatan analisis	6	Laptop, LCD, module, paper exam
12	Membandingkan dasar analisis DNA Barcoding utuk kekerabatan spesies	Dasar analisis DNA Barcoding utuk kekerabatan spesies	DNA Barcoding analysis on molecular biodiversity and taxonomy of microbe	Bacteri, Virus, Jamur	Presentation, Lecture and discussion	Kebenaran dan ketepatan analisis	6	Laptop, LCD, module, paper exam
13-14	Menenetapkan biomarker untuk analisis sisdik jari pada tanaman	Type biomarker untuk analisis sisdik jari pada tanaman	Biomarker for plant DNA Fingertyping and Barcoding analysis	Minisatelite, microsatelite	Presentation, Lecture and discussion	Kebenaran dan ketepatan analisis	6	Laptop, LCD, module, paper exam
15	Membandingkan analisis DNA Barcoding pada biodiversitas dan kekerabatan pada tanaman	Analisis DNA Barcoding pada biodiversitas dan kekerabatan pada tanaman	DNA Fingerprinting analayis on molecular biodiversity and taxonomy of plant	RFLP, Simple sequence length polymorphisms (SSLP), RAPD	Presentation, Mini Project, Lecture and discussion	Kebenaran dan ketepatan analisis	6	Laptop, LCD, module, paper exam

Daftar Pustaka

John M Butler. 2009. Fundamentals of Forensic DNA Typing 1st Edition. Academic Press. ISBN-13: 978-0123749994. ISBN-10: 0123749999

Richads Li. 2015. Forensic Biology. 2nd Edition. CRS. · ISBN-10: 1439889708 · ISBN-13: 978-1439889701

Jörg Epplen and Thomas Lubjuhnn. 1999. DNA Profiling and DNA Fingerprinting. Birkhäuser. ISBN-10: 3764360186. ISBN-13: 978-3764360184

Ricki Lewis. 2011. Human Genetics concepts and application. McGraw-Hill Education; 10 edition ISBN-13: 978-0073525303, ISBN-10: 0073525308 or ISBN: 007246268x

Tom Strachan & Andrew Read.2003. Human Molecular genetics. Garland Science; 3 edition. · ISBN-10: 0815341822 · ISBN-13: 978-0815341826

Julian Knight.2009. Human Genetic Diversity. Oxford Univrsity Press. London.

Robert Nussbaum, Roderick R. McInnes, and Huntington F Willard. 2007. Genetics in Medicine, 7th Edition. Sounders. · ISBN: 9781416030805

Ida Lopez and David L. Erickson. 2012. DNA Barcodes: Methods and Protocols (Methods in Molecular Biology). Human Press. ISBN-13: 978-1617795909. ISBN-10: 1617795909

Nikolaus J. Sucher and James R. Hennell. 2012. Plant DNA Fingerprinting and Barcoding: Methods and Protocols (Methods in Molecular Biology). Human Press. ISBN-13: 978-1617796081. ISBN-10: 1617796085

Erich Grotewold and Joseph Chappel. 2015. Plant Genes, Genomes and Genetics. Willey Blackwell. ISBN-13: 978-1119998877. ISBN-10: 1119998875

Cecie Starr, Ralph Taggart, Christine Evers, & Lisa Starr. Biology: The Unity and Diversity of Life 14th Edition. Brooks Cole. ISBN-13: 978-1305073951. ISBN-10: 1305073959

Gene Helfman and Bruce B. Collette. 2009. The Diversity of Fishes: Biology, Evolution, and Ecology. Wiley-Blackwell; 2 edition. ISBN-10: 1405124946. ISBN-13: 978-1405124942

Jacques Izard and Maria Rivera. 2014. Metagenomics for Microbiology. !rst Ed. Academic Press. ISBN-13: 978-0124104723. ISBN-10: 012410472X

Sandra Tscherwizek. 2008. 16S Ribosomal RNA Gene Sequencing: Establishment of a Method for the Identification of Microorganisms in Biopharmaceutical Production Areas. VDM Verlag Dr Muller. ISBN-13: 978-3639109030. ISBN-10: 3639109031

RPS MK Human genetics (Medical genetics)

By Prof. Fatchiyah, Ph.D.

Sep

Matriks Rencana Pembelajaran Semester MK Genetika Manusia atau Genetika Medik.

Week	Lerning Outcome	Focus study	Pokok Bahasan (topics)	Sub Pokok Bahasan (subtopics)	Bentuk Pembelajaran (Learning methods)	Indikator/Kriteria Penilaian (Value Criteria)	Bobot Nilai (%)	Fasilitas Pembelajaran (learning Facility)
1	Understand basic concepts of human genetics	Basic concepts of human genetics			Lecture and discussion		6	Laptop, LCD, module
2	Understand Mendelian inheritance patterns of the different types of inheritance patterns of human disease.	Identify and Compare a Mendelian inheritance pattern of different types of inheritance patterns of human disease	Mendelian inheritance pattern of human disease Types of inheritance patterns of human disease	Mendel law, single gene and polygenetics factors Sex-linked, multifactorial and maternal inheritance	Presentation, Lecture and discussion	Kebenaran dan ketepatan analisis	6	Laptop, LCD, module, paper exam
3-4	Understand multigenic inheritance patterns.	Identify a multigenic inheritance pattern.	Mapping and characterizing “simple” genetic disease	Mapping disease genes, disease-associated mutations, diseases associated with a gene loss-function effect, nuclear and mitochondrial genome mutations, Evolution of a gene cluster and divergence of function	Presentation, Lecture and discussion	Kebenaran dan ketepatan analisis	18	Laptop, LCD, module, paper exam
5-6	Understand Gene-environment interaction in behavior related Genomics to the study of complex diseases	Identifify Gene-environment interaction in behavior related Genomics to the study of complex diseases	Mapping and characterizing “complex” genetic diseases	Genomics for the study of complex diseases, genetic study of type 2 diabetes and obesity, Gene-environment interaction in behavior, pharmacogenetics	Presentation, Lecture and discussion	Kebenaran dan ketepatan analisis	16	Laptop, LCD, module, paper exam
6-8	Understand the current research into epigenetic and transgenerational inheritance.	Explain the basics of epigenetic and transgenerational inheritance.	Sex, prions, and epigenetics	Epigenetic inheritance of chromatin states / Role of DNA methylation in human disease,dysregulation of the histone modification machinery, transgenerational epigenetic inheritance, sex determination, prion diseases	Presentation, Lecture and discussion	Kebenaran dan ketepatan analisis	12	Laptop, LCD, module, paper exam
9-10	Understand Chromosomal and genomic disorders	Identify Chromosomal and genomic disorders	Chromosomal and genomic disorders	Mechanisms and maternal age influence the origin of aneuploidy in humans, mechanisms causing these aberrations, fragile X syndrome	Presentation, Lecture and discussion	Kebenaran dan ketepatan analisis	12	Laptop, LCD, module, paper exam
11-12	Understand the potential implications of personalized and genomic medicine	Explain the potential benefits and risks/challenges of genomic medicine.	Natural genetics resources: the potential benefits and risks/challenges	Pharcogenenomic and/orNutrigenomic: Bioactive compound, phytopharmaca, functional food for healthy controlling	Presentation, Lecture and discussion	Kebenaran dan ketepatan analisis	6	Laptop, LCD, module, paper exam
13	Understand some of the ethical issues facing genomic researchers.	Explain some of the ethical challenges raised by the prevalence of genomic data	Medical genetics and the associated ethical, legal, and social implications	Ethical clearanceInform consent ELSI for medical research based on samples of human or animal model	Presentation, Lecture and discussion	Kebenaran dan ketepatan analisis	6	Laptop, LCD, module, paper exam
14-15	Understand how to interpret data from a genome-wide association (GWA) study and Genetic Testing	Analyze data from genome-wide association studies.	Genome-wide association (GWA) study and Genetic Testing	Genome-wide association (GWA) studyType, across the life span (prenatal, pediatric and adult), technology, molecular, clinical and ethical perspectives	Presentation, Lecture and discussion	Kebenaran dan ketepatan analisis	16	Laptop, LCD, module, paper exam

Daftar Pustaka

Rick Lewis. 2011. Basic Human Genetics. Routledge Taylor & Francis group, NY · ISBN-10: 0415579864 · ISBN-13: 978-0415579865,

Ricki Lewis. 2011. Human Genetics concepts and application. McGraw-Hill Education; 10 edition ISBN-13: 978-0073525303, ISBN-10: 0073525308 or ISBN: 007246268x

Tom Strachan & Andrew Read.2003. Human Molecular genetics. Garland Science; 3 edition. · ISBN-10: 0815341822 · ISBN-13: 978-0815341826

Julian Knight.2009. Human Genetic Diversity. Oxford Univrsity Press. London.

Robert Nussbaum, Roderick R. McInnes, and Huntington F Willard. 2007. Genetics in Medicine, 7th Edition. Sounders. · ISBN: 9781416030805

Atau pustaka yang terbaru sesuai dengan materi kuliah

Fatchiyah – Molecular Genetics

Brawijaya University

Lecture teknik analisis sidik jari molekuler

material lecture of Molecular Fingerprint

Jadual Kuliah Biologi Molekuler (MAB 4162) Kelas A dan B JB UB

assigment 1 of human genetics lecture

Materi Workshop Pengelolaan Laboratorium oleh RG Smonagenes UB

RPS MK Sidik Jari Molekuler

RPS MK Human genetics (Medical genetics)

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